m komanii sp nov  (ATCC)

Journal: MicrobiologyOpen

Article Title: Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium

doi: 10.1002/mbo3.70051

Figure Lengend Snippet: Growth profiles for P. loganensis sp. nov. at different pH (A) and NaCl concentrations (B).

Article Snippet: Additionally P. loganensis sp. nov. were represented 99.94%, 99.93%, 99.74%, 99.68%, 99.68%, 99.41%, 99.349%, and 96.81% sequence similarity with Pseudomonas oryzihabitans FDAARGOS_657, Pseudomonas oryzihabitans NBRC 102199, Pseudomonas oryzihabitans LMG 7040, Pseudomonas benzopyrenica MLY92, Pseudomonas oryzihabitans KNF2016, Pseudomonas oleovorans IAM 1508, Pseudomonas rhizoryzae ZYY160, Pseudomonas rhizoryzae RY24, and Stutzerimonas stutzeri ATCC 17588, respectively.

Techniques:

Journal: MicrobiologyOpen

Article Title: Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium

doi: 10.1002/mbo3.70051

Figure Lengend Snippet: The phylogenetic tree is derived from the 16S rRNA genes of P. loganensis sp. nov. and other members that exhibit 95% or more similarity to it. Dendrograms were constructed using the neighbor‐joining method. Bootstrap frequencies exceeding 50% (which came from 1000 replicates) are shown at the nodes. Accession numbers or Identifiers are provided in parenthesis, sourced from NCBI and JGI‐IMG/M. The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site. This analysis involved 58 nucleotide sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 1850 positions in the final data set.

Article Snippet: Additionally P. loganensis sp. nov. were represented 99.94%, 99.93%, 99.74%, 99.68%, 99.68%, 99.41%, 99.349%, and 96.81% sequence similarity with Pseudomonas oryzihabitans FDAARGOS_657, Pseudomonas oryzihabitans NBRC 102199, Pseudomonas oryzihabitans LMG 7040, Pseudomonas benzopyrenica MLY92, Pseudomonas oryzihabitans KNF2016, Pseudomonas oleovorans IAM 1508, Pseudomonas rhizoryzae ZYY160, Pseudomonas rhizoryzae RY24, and Stutzerimonas stutzeri ATCC 17588, respectively.

Techniques: Derivative Assay, Construct, Sequencing

Journal: MicrobiologyOpen

Article Title: Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium

doi: 10.1002/mbo3.70051

Figure Lengend Snippet: Phylogenetic tree based on concatenated sequences of 16S rRNA, rpoB , rpoD , and gyrB genes of P. loganensis sp. nov., P. aestiva , P. oryzihabitans , P. rhizoryzae , and other 95% and over nucleotide identity exhibiting Pseudomonas members in accordance with 16S rRNA. Branches corresponding to partitions reproduced in less than 50% bootstrap replicates are collapsed. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site. This analysis involved 50 nucleotide sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There was a total of 11,792 positions in the final data set. Identifiers or accessions numbers belong to 16S rRNA, rpoB , rpoD , and gyrB genes that were acquired from NCBI, BV‐BRC, or JGI‐IMG/M and were presented in parentheses, respectively.

Article Snippet: Additionally P. loganensis sp. nov. were represented 99.94%, 99.93%, 99.74%, 99.68%, 99.68%, 99.41%, 99.349%, and 96.81% sequence similarity with Pseudomonas oryzihabitans FDAARGOS_657, Pseudomonas oryzihabitans NBRC 102199, Pseudomonas oryzihabitans LMG 7040, Pseudomonas benzopyrenica MLY92, Pseudomonas oryzihabitans KNF2016, Pseudomonas oleovorans IAM 1508, Pseudomonas rhizoryzae ZYY160, Pseudomonas rhizoryzae RY24, and Stutzerimonas stutzeri ATCC 17588, respectively.

Techniques: Sequencing